• Digital World and Robotics

Lille bioinformatics platform (Bilille)

Platform

Description

Bilille is the Lille bioinformatics platform. We support research units and platforms in biology and health in their activities by providing bioinformatics or biostatistical support. Bilille’s scientific scope includes in particular: omics data analysis, sequence annotation, phylogeny, systems biology, structural bioinformatics, integrative biology, high content screening data analysis and image data analysis. The platform's cross-disciplinary and diversified expertise in the analysis of data from the fields of biology, environment and health research enables it to offer a wide range of local services, from consulting to support in your projects, whether you are a beginner or an experienced researcher. We are open to all collaborations, academic or industrial.

Contacts

  • Guillemette Marot
    Scientific manager
  • Pierre Pericard
    Technical manager
  • Jimmy Vandel
    Technical manager

Informations

Bâtiment ESPRIT, Avenue Paul Langevin
Campus Cité scientifique, Université de Lille
59650 VILLENEUVE D'ASCQ

https://wikis.univ-lille.fr/bilille/

Lille bioinformatics platform

Chiffres clés

• more than 400 users since 2016
• ~ 20 projects supported per year
• ~ 30 days of training per year
• 2-3 scientific days per year

Effectif

Effectif total : 9

Expertises

Skills

• Omics data analysis (genomics, transcriptomics, proteomics, metagenomics, epigenomics, ...)
• Imaging data analysis
• Development of analysis pipelines and databases
• Integrative biology
• Annotation of genes, genomes and proteins
• Phylogeny
• Systems biology
• Structural bioinformatics
• Analysis of high content screening data
• Development of bioinformatics and biostatistics tools

Example(s) of projects

• mirKwood: complete pipeline for the identification and annotation of microRNAs in plant genomes from small-RNA-seq sequencing data 🡭
• Viscorvar: R package for visualizing multi-block data integration results 🡭
• Norine: software platform for the analysis of non-ribosomal peptides 🡭
• Assembly and annotation of metatranscriptomic data of flax retting in the field
• Integration of data (transcriptomics, metabolomics, metagenomics, cytometry, clinical) by statistical approaches in the study of the role of cytokines in metabolic, intestinal and pulmonary alterations

Collaborations/Partners/Scientific clients

Institut Français de Bioinformatique, Institut National du Cancer (INCa), Laboratoire MAP UMR5240, Plateforme "Exploration du Métabolisme" INRAE Clermont-Ferrand

Collaborations/Partners/Private Clients

Copalis, ANSES

Services offers

Applications sectors

  • Science / Research

Services provided

• Analysis of biological data (sequencing data, evolution modeling, proteomics, annotation of genes, proteins and genomes, data screening, cytometry, structural bioinformatics, glycobiology)
• Development of software tools, pipelines or databases
• Provision of software resources
• Provision of high-performance computing resources
• Setting up collaborative projects requiring expertise in bioinformatics and/or biostatistics

Training offers

• Training in bioinformatics tools and approaches (databases, blast, annotation, alignment, phylogeny)
• Training in high-throughput sequencing data analysis (DNA sequencing, RNA-seq, Variants, Metagenomics, ChIP-seq)
• Training in data analysis with R and Bioconductor

Consulting services

We provide consulting services related to all our areas of expertise.

Equipments

We possess a Cloud: 360 CPU cores, 3 Tb RAM, 140 Tb storage, including about ⅓ integrated into the Biosphere national federation. Available to the community for data analysis projects.

See the detailed list of equipment: https://wikis.univ-lille.fr/bilille/calcul

Ecosystem

Affiliated institutions / organisations

CHU de Lille
Inserm
CNRS

Partner institution(s)

INRIA

Unit(s) of attachment

Groups/Networks/Federations

France Génomique
Institut Français de Bioinformatique
ELIXIR

Labellisations

Regional strategic areas of activity

  • Digital World and Robotics
    • Artificial intelligence, image processing, data science

Request for modification

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Thematics

Current thematics

  • Digital World and Robotics
    • Artificial intelligence, image processing, data science
Title

Current content

Lille bioinformatics platform
Type

Current content

Plateforme analytique
Description

Current content

Bilille is the Lille bioinformatics platform. We support research units and platforms in biology and health in their activities by providing bioinformatics or biostatistical support. Bilille’s scientific scope includes in particular: omics data analysis, sequence annotation, phylogeny, systems biology, structural bioinformatics, integrative biology, high content screening data analysis and image data analysis. The platform's cross-disciplinary and diversified expertise in the analysis of data from the fields of biology, environment and health research enables it to offer a wide range of local services, from consulting to support in your projects, whether you are a beginner or an experienced researcher. We are open to all collaborations, academic or industrial.
Contact informations
Contact

Current content

Contact name Email phone number
MAROT Guillemette bilille@univ-lille.fr
PERICARD Pierre pierre.pericard@univ-lille.fr
VANDEL Jimmy jimmy.vandel@univ-lille.fr
URL

Current content

https://wikis.univ-lille.fr/bilille/

Address

Current content

Bâtiment ESPRIT, Avenue Paul Langevin
Campus Cité scientifique, Université de Lille
59650 VILLENEUVE D'ASCQ
Keywords

Current content

bioinformatics, statistical learning, machine learning, analysis pipeline, database, -omics data, sequence annotation, biological data analysis, integrative biology
Our search domains
Skills

Current content

• Omics data analysis (genomics, transcriptomics, proteomics, metagenomics, epigenomics, ...) • Imaging data analysis • Development of analysis pipelines and databases • Integrative biology • Annotation of genes, genomes and proteins • Phylogeny • Systems biology • Structural bioinformatics • Analysis of high content screening data • Development of bioinformatics and biostatistics tools
Key data

Current content

• more than 400 users since 2016 • ~ 20 projects supported per year • ~ 30 days of training per year • 2-3 scientific days per year
Workforce

Current content

Effectif total : 9
Example(s) of projects

Current content

• mirKwood: complete pipeline for the identification and annotation of microRNAs in plant genomes from small-RNA-seq sequencing data 🡭 • Viscorvar: R package for visualizing multi-block data integration results 🡭 • Norine: software platform for the analysis of non-ribosomal peptides 🡭 • Assembly and annotation of metatranscriptomic data of flax retting in the field • Integration of data (transcriptomics, metabolomics, metagenomics, cytometry, clinical) by statistical approaches in the study of the role of cytokines in metabolic, intestinal and pulmonary alterations
Example(s) of publications

Current content

Collaborations/Partners/Scientific clients

Current content

Institut Français de Bioinformatique, Institut National du Cancer (INCa), Laboratoire MAP UMR5240, Plateforme "Exploration du Métabolisme" INRAE Clermont-Ferrand
Collaborations/Partners/Private Clients

Current content

Copalis, ANSES
Services offers
Training offers

Current content

• Training in bioinformatics tools and approaches (databases, blast, annotation, alignment, phylogeny)
• Training in high-throughput sequencing data analysis (DNA sequencing, RNA-seq, Variants, Metagenomics, ChIP-seq)
• Training in data analysis with R and Bioconductor
Services offers

Current content

• Analysis of biological data (sequencing data, evolution modeling, proteomics, annotation of genes, proteins and genomes, data screening, cytometry, structural bioinformatics, glycobiology) • Development of software tools, pipelines or databases • Provision of software resources • Provision of high-performance computing resources • Setting up collaborative projects requiring expertise in bioinformatics and/or biostatistics
Consulting services

Current content

We provide consulting services related to all our areas of expertise.
Equipments
Equipements spécifiques

Current content

We possess a Cloud: 360 CPU cores, 3 Tb RAM, 140 Tb storage, including about ⅓ integrated into the Biosphere national federation. Available to the community for data analysis projects.

See the detailed list of equipment: https://wikis.univ-lille.fr/bilille/calcul
Ecosystem
Affiliated institutions / organisations

Current content

  • University of Lille
  • CHU de Lille
  • Inserm
  • CNRS
Établissement(s) partenaire(s)

Current content

INRIA
Unit(s) of attachment

Current content

  • Lille Platforms in Biology and Health
Groups/Networks/Federations

Current content

France Génomique Institut Français de Bioinformatique ELIXIR
Competitive cluster

Current content

Regional strategic areas of activity

Current content

  • Digital World and Robotics
  • Artificial intelligence, image processing, data science
Labelling

Current content

Personal informations
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